A genomewide admixture map for Latino populations

作者:Price Alkes L; Patterson Nick; Yu Fuli; Cox David R; Waliszewska Alicja; McDonald Gavin J; Tandon Arti; Schirmer Christine; Neubauer Julie; Bedoya Gabriel; Duque Constanza; Villegas Alberto; Bortolini Maria Catira; Salzano Francisco M; Gallo Carla; Mazzotti Guido; Tello Ruiz Marcela; Riba Laura; Aguilar Salinas Carlos A; Canizales Quinteros Samuel; Menjivar Marta; Klitz William; Henderson Brian; Haiman Christopher A; Winkler Cheryl; Tusie Luna Teresa
来源:American Journal of Human Genetics, 2007, 80(6): 1024-1036.
DOI:10.1086/518313

摘要

Admixture mapping is an economical and powerful approach for localizing disease genes in populations of recently mixed ancestry and has proven successful in African Americans. The method holds equal promise for Latinos, who typically inherit a mix of European, Native American, and African ancestry. However, admixture mapping in Latinos has not been practical because of the lack of a map of ancestry-informative markers validated in Native American and other populations. To address this, we screened multiple databases, containing millions of markers, to identify 4,186 markers that were putatively informative for determining the ancestry of chromosomal segments in Latino populations. We experimentally validated each of these markers in at least 232 new Latino, European, Native American, and African samples, and we selected a subset of 1,649 markers to form an admixture map. An advantage of our strategy is that we focused our map on markers distinguishing Native American from other ancestries and restricted it to markers with very similar frequencies in Europeans and Africans, which decreased the number of markers needed and minimized the possibility of false disease associations. We evaluated the effectiveness of our map for localizing disease genes in four Latino populations from both North and South America.

  • 出版日期2007-6