A novel SNP in promoter region of RP11-3N2.1 is associated with reduced risk of colorectal cancer

作者：Ye, Ding; Hu, Yunqing; Jing, Fangyuan; Li, Yingjun; Gu, Simeng; Jiang, Xiyi; Mao, Yingying; Li, Qilong; Jin, Mingjuan^*; Chen, Kun^*

来源：Journal of Human Genetics, 2018, 63(1): 47-54.

DOI：10.1038/s10038-017-0361-3

• LONG NONCODING RNA
• GENOME-WIDE ASSOCIATION
• COLON-CANCER
• CLINICAL-SIGNIFICANCE
• SUSCEPTIBILITY
• METAANALYSIS
• PROGRESSION
• EXPRESSION
• MORTALITY
• CARCINOMA

Single-nucleotide polymorphisms (SNPs) in the promoter region of long intergenic non-coding RNAs (lincRNAs) could play a regulatory role in its expression level and then get involved in colorectal cancer (CRC). Thus, we conducted a two-stage case-control study to investigate the associations of Tag SNPs within the promoter region of selected lincRNAs from microarray data with risk of CRC. A total of 320 cases and 319 controls were recruited in the test set to explore the associations between 16 SNPs with no deviations from Hardy-Weinberg equilibrium (HWE) and risk of CRC. Furthermore, 501 cases and 538 controls were included as the validation set to confirm the significant associations. RP11-3N2.1 rs13230517 polymorphism was found to be negatively associated with CRC in both test set (AA vs. GG, OR = 0.68, 95% CI = 0.48-0.96) and validation set (AA vs. GG, OR = 0.76, 95% CI = 0.59-0.98). Pooled analysis showed that individuals with GA/AA genotypes had a significantly decreased risk of CRC when compared with those carrying GG genotype (OR = 0.74, 95% CI = 0.60-0.90) in the combined set. The crossover analysis revealed that rs13230517 GA/AA carriers had a decreased risk of CRC than GG carriers among non-drinkers in both test and combined set. However, no gene-environment multiplicative interactions were found on risk of CRC. Our findings suggest that rs13230517 polymorphism might participate in the pathogenesis of CRC and have the potential to be a biomarker for predicting the risk of CRC.

• 出版日期2018-1
• 单位浙江中医药大学; 浙江大学