A Sox2 distal enhancer cluster regulates embryonic stem cell differentiation potential

作者：Zhou Harry Y; Katsman Yulia; Dhaliwal Navroop K; Davidson Scott; Macpherson Neil N; Sakthidevi Moorthy; Collura Felicia; Mitchell Jennifer A^*

来源：Genes & Development, 2014, 28(24): 2699-2711.

DOI：10.1101/gad.248526.114

• chromatin
• transcription
• enhancer elements
• Sox2
• embryonic stem cell
• gene expression regulation

The Sox2 transcription factor must be robustly transcribed in embryonic stem (ES) cells to maintain pluripotency. Two gene-proximal enhancers, Sox2 regulatory region 1 (SRR1) and SRR2, display activity in reporter assays, but deleting SRR1 has no effect on pluripotency. We identified and functionally validated the sequences required for Sox2 transcription based on a computational model that predicted transcriptional enhancer elements within 130 kb of Sox2. Our reporter assays revealed three novel enhancers-SRR18, SRR107, and SRR111-that, through the formation of chromatin loops, form a chromatin complex with the Sox2 promoter in ES cells. Using the CRISPR/Cas9 system and F1 ES cells (Mus musculus(129) x Mus castaneus), we generated heterozygous deletions of each enhancer region, revealing that only the distal cluster containing SRR107 and SRR111, located > 100 kb downstream from Sox2, is required for cis-regulation of Sox2 in ES cells. Furthermore, homozygous deletion of this distal Sox2 control region (SCR) caused significant reduction in Sox2 mRNA and protein levels, loss of ES cell colony morphology, genome-wide changes in gene expression, and impaired neuroectodermal formation upon spontaneous differentiation to embryoid bodies. Together, these data identify a distal control region essential for Sox2 transcription in ES cells.

• 出版日期2014-12-15