NMDB: NETWORK MOTIF DATABASE ENVISAGED AND EXPLICATED FROM HUMAN DISEASE SPECIFIC PATHWAYS

作者：Pratap Abhay; Taliyan Setu; Singh Tiratha Raj^*

来源：Journal of Biological Systems, 2014, 22(1): 89-100.

DOI：10.1142/S0218339014500053

• Biological Networks
• Network Motifs
• Autoregulation
• Feedforward Loops
• Bifan
• NMDB

The study of network motifs for large number of networks can aid us to resolve the functions of complex biological networks. In biology, network motifs that reappear within a network more often than expected in random networks include negative autoregulation, positive autoregulation, single-input modules, feedforward loops, dense overlapping regulons and feedback loops. These network motifs have their different dynamical functions. In this study, our main objective is to examine the enrichment of network motifs in different biological networks of human disease specific pathways. We characterize biological network motifs as biologically significant sub-graphs. We used computational and statistical criteria for efficient detection of biological network motifs, and introduced several estimation measures. Pathways of cardiovascular, cancer, infectious, repair, endocrine and metabolic diseases, were used for identifying and interlinking the relation between nodes. 3-8 sub-graph size network motifs were generated. Network Motif Database was then developed using PHP and MySQL. Results showed that there is an abundance of autoregulation, feedforward loops, single-input modules, dense overlapping regulons and other putative regulatory motifs in all the diseases included in this study. It is believed that the database will assist molecular and system biologists, biotechnologists, and other scientific community to encounter biologically meaningful information. Network Motif Database is freely available for academic and research purpose at: http://www.bioinfoindia.org/nmdb.

• 出版日期2014-3