A hybrid gene selection approach for microarray data classification using cellular learning automata and ant colony optimization

作者：Sharbaf Fatemeh Vafaee; Mosafer Sara; Moattar Mohammad Hossein^*

来源：Genomics, 2016, 107(6): 231-238.

DOI：10.1016/j.ygeno.2016.05.001

• Gene selection
• Microarray data
• Cellular learning automata
• Ant colony optimization
• K-nearest neighbor
• Naive Bayes

This paper proposes an approach for gene selection in microarray data. The proposed approach consists of a primary filter approach using Fisher criterion which reduces the initial genes and hence the search space and time complexity. Then, a wrapper approach which is based on cellular learning automata (CLA) optimized with ant colony method (ACO) is used to find the set of features which improve the classification accuracy. CLA is applied due to its capability to learn and model complicated relationships. The selected features from the last phase are evaluated using ROC curve and the most effective while smallest feature subset is determined. The classifiers which are evaluated in the proposed framework are K-nearest neighbor; support vector machine and naive Bayes. The proposed approach is evaluated on 4 microarray datasets. The evaluations confirm that the proposed approach can find the smallest subset of genes while approaching the maximum accuracy.

• 出版日期2016-6