Analyzing Fluxional Molecules Using DORI

作者:Vannay Laurent; Meyer Benjamin; Petraglia Riccardo; Sforazzini Giuseppe; Ceriotti Michele; Corminboeuf Clemence*
来源:Journal of Chemical Theory and Computation, 2018, 14(5): 2370-2379.
DOI:10.1021/acs.jctc.7b01176

摘要

The Density Overlap Region Indicator (DORI) is a density-based scalar field that reveals covalent bonding patterns and noncovalent interactions in the same value range. This work goes beyond the traditional static quantum chemistry use of scalar fields and illustrates the suitability of DORI for analyzing geometrical and electronic signatures in highly fluxional molecular systems. Examples include a dithiocyclophane, which possesses multiple local minima with differing extents of pi-stacking interactions and a temperature dependent rotation of a molecular rotor, where the descriptor is employed to capture fingerprints of CH-pi and pi-pi interactions. Finally, DORI serves to examine the fluctuating pi-conjugation pathway of a photochromic torsional switch (PTS). Attention is also placed on postprocessing the large amount of generated data and juxtaposing DORI with a data-driven low-dimensional representation of the structural landscape.

  • 出版日期2018-5