Discovery of transcriptional regulators and signaling pathways in the developing pituitary gland by bioinformatic and genomic approaches

作者：Brinkmeier Michelle L; Davis Shannon W; Carninci Piero; MacDonald James W; Kawai Jun; Ghosh Debashis; Hayashizaki Yoshihide; Lyons Robert H; Camper Sally A^*

来源：Genomics, 2009, 93(5): 449-460.

DOI：10.1016/j.ygeno.2008.11.010

• Cap trapper
• Homeobox gene
• Prop1
• Gene expression
• Ames dwarf

We report a catalog of the mouse embryonic pituitary gland transcriptome consisting of five cDNA libraries including wild type tissue from E12.5 and E14.5, Prop1(df/df) mutant at E14.5 and two cDNA subtractions: E14.5 WT-E14.5 Prop1(df/df) and E14.5 WT-E12.5 WT. DNA sequence information is assembled into a searchable database with gene ontology terms representing 12,009 expressed genes. We validated coverage of the libraries by detecting most known homeobox gene transcription factor cDNAs. A total of 45 homeobox genes were detected as part of the pituitary transcriptome, representing most expected ones, which validated library coverage, and many novel ones, underscoring the utility of this resource as a discovery tool. We took a similar approach for signaling-pathway members with novel pituitary expression and found 157 genes related to the BMP, FGF, WNT, SHH and NOTCH pathways. These genes are exciting candidates for regulators of pituitary development and function.

• 出版日期2009-5