A new approach to genome mapping and sequencing: slalom libraries

作者：Zabarovska VI; Gizatullin RZ; Al Amin AN; Podowski R; Protopopov AI; Lofdahl S; Wahlestedt C; Winberg G; Kashuba VI; Ernberg I; Zabarovsky ER^*

来源：Nucleic Acids Research, 2002, 30(2): e6.

DOI：10.1093/nar/30.2.e6

We describe here an efficient strategy for simultaneous genome mapping and sequencing. The approach is based on physically oriented, overlapping restriction fragment libraries called slalom libraries. Slalom libraries combine features of general genomic, lumping and linking libraries. Slalom libraries can be adapted to different applications and two main types of slalom libraries are described in detail. This approach was used to map and sequence (with similar to46% coverage) two human P1-derived artificial chromosome (PAC) clones, each of similar to100 kb. This model experiment demonstrates the feasibility of the approach and shows that. the efficiency (cost-effectiveness and speed) of existing mapping/sequencing methods could be improved at least 5-10-fold. Furthermore, since the efficiency of contig assembly in the slalom approach is virtually Independent of length of sequence reads, even short sequences produced by rapid, high throughput sequencing techniques would suffice to complete a physical map and a sequence scan of a small genome.

• 出版日期2002-1-15