PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies

作者：Mallet Ludovic^*; Bitard Feildel Tristan; Cerutti Franck; Chiapello Helene

来源：Bioinformatics, 2017, 33(20): 3283-3285.

DOI：10.1093/bioinformatics/btx396

Motivation: Genome sequencing projects sometimes uncover more organisms than expected, especially for complex and/or non-model organisms. It is therefore useful to develop software to identify mix of organisms from genome sequence assemblies.
Results: Here we present PhylOligo, a new package including tools to explore, identify and extract organism-specific sequences in a genome assembly using the analysis of their DNA compositional characteristics.

• 出版日期2017-10-15