A SIMPLE METHOD FOR DETECTING SINGLE-BASE SUBSTITUTIONS AND ITS APPLICATION TO HLA-DPB1 TYPING

作者:OKA T*; MATSUNAGA H; TOKUNAGA K; MITSUNAGA S; JUJI T; YAMANE A
来源:Nucleic Acids Research, 1994, 22(9): 1541-1547.
DOI:10.1093/nar/22.9.1541

摘要

We have developed a simple and reliable method, PCR-PHFA (polymerase chain reaction dependent preferential homoduplex formation assay), for detection of single base substitutions within PCR amplicons. This technique is based upon strand competition during hybridization between a double labeled amplicon, prepared from biotin and DNP labeled primers, and an unlabeled amplicon. Under the precisely controlled temperature gradient, the preferential formation of a homoduplex over a heteroduplex occurs. After annealing, the identical sequence of the double labeled and unlabeled amplicon resulted in a low population of regenerated double labeled dsDNA due to strand exchange between them. Even when the two differed by only a single base substitution, double labeled molecule was regenerated efficiently because of preferential homoduplex formation. The regenerated double labeled molecule was captured onto a streptavidin coated microtiter plate and quantified enzymatically with a chromogenic substrate. The technique has been successfully applied in HLA-DPB1 typing. Furthermore, we detected a mutated gene even in the presence of a large excess of the corresponding normal gene.

  • 出版日期1994-5-11

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