Direct assignment of C-13 solid-state NMR signals of TFoF1 ATP synthase subunit c-ring in lipid membranes and its implication for the ring structure

作者：Kang Su-Jin; Todokoro Yasuto; Bak Suyeon; Suzuki Toshiharu; Yoshida Masasuke; Fujiwara Toshimichi; Akutsu Hideo^*

来源：Journal of Biomolecular NMR, 2018, 70(1): 53-65.

DOI：10.1007/s10858-017-0158-x

• F-type ATP synthase
• Membrane protein
• CP/MAS NMR
• Specific isotope labeling
• Hairpin fold
• Lipid-protein interaction

FoF1-ATP synthase catalyzes ATP hydrolysis/synthesis coupled with a transmembrane H+ translocation in membranes. The F-o c-subunit ring plays a major role in this reaction. We have developed an assignment strategy for solid-state C-13 NMR (ssNMR) signals of the F-o c-subunit ring of thermophilic Bacillus PS3 (TFo c-ring, 72 residues), carrying one of the basic folds of membrane proteins. In a ssNMR spectrum of uniformly C-13-labeled sample, the signal overlap has been a major bottleneck because most amino acid residues are hydrophobic. To overcome signal overlapping, we developed a method designated as COmplementary Sequential assignment with MInimum Labeling Ensemble (COSMILE). According to this method, we generated three kinds of reverse-labeled samples to suppress signal overlapping. To assign the carbon signals sequentially, two-dimensional C alpha(i+1)-C'C-alpha(i) correlation and dipolar assisted rotational resonance (DARR) experiments were performed under magic-angle sample spinning. On the basis of inter- and intra-residue C-13-C-13 chemical shift correlations, 97% of C-alpha, 97% of C-beta and 92% of C' signals were assigned directly from the spectra. Secondary structure analysis predicted a hairpin fold of two helices with a central loop. The effects of saturated and unsaturated phosphatidylcholines on TFo c-ring structure were examined. The DARR spectra at 15 ms mixing time are essentially similar to each other in saturated and unsaturated lipid membranes, suggesting that TFo c-rings have similar structures under the different environments. The spectrum of the sample in saturated lipid membranes showed better resolution and structural stability in the gel state. The C-terminal helix was suggested to locate in the outer layer of the c-ring.

• 出版日期2018-1