Microsolvation and hydrogen bond interactions in Glycine Dipeptide: Molecular dynamics and density functional theory studies

作者：Yogeswari Balasubramaniam; Kanakaraju Ramasamy; Boopathi Subramaniam; Kolandaivel Ponmalai^*

来源：Journal of Molecular Graphics and Modelling, 2012, 35: 11-20.

DOI：10.1016/j.jmgm.2012.02.002

• Glycine Dipeptide
• Microsolvation
• AIM analysis
• Natural bond orbital
• NMR

Molecular dynamics (MD) simulations were carried out to study the conformational characteristics of Glycine Dipeptide (GD) in the presence of explicit water molecules for over 10 ns with a MD time step of 2 fs. The density functional theory (DFT) methods with 6-311G** basis set have been employed to study the effects of microsolvation on the conformations of C;D with 5-10 water molecules. The interaction energy with BSSE corrections and the strength of the intermolecular hydrogen bond interactions have been analyzed. The Bader's Atoms in Molecules (AIM) theory has been employed to investigate H-bonding patterns in water interacting complexes. The natural bond orbital (NBO) analysis has been carried out to analyze the charge transfer between proton acceptor to the antibonding orbital of the X-H bond in the hydrated complexes. NMR calculations have been carried out at B3LYP/6-311G (2d, 2p) level of theory to analyse the changes in structure and hydrogen bonding environment that occur upon solvation.

• 出版日期2012-5