A Bayesian Poisson-lognormal Model for Count Data for Multiple-Trait Multiple-Environment Genomic-Enabled Prediction

作者:Montesinos Lopez Osval A; Montesinos Lopez Abelardo; Crossa Jose; Toledo Fernando H; Montesinos Lopez Jose C; Singh Pawan; Juliana Philomin; Salinas Ruiz Josafhat
来源:Genes Genomes Genetics, 2017, 7(5): 1595-1606.
DOI:10.1534/g3.117.039974

摘要

When a plant scientist wishes to make genomic-enabled predictions of multiple traits measured in multiple individuals in multiple environments, the most common strategy for performing the analysis is to use a single trait at a time taking into account genotype x environment interaction (G x E), because there is a lack of comprehensive models that simultaneously take into account the correlated counting traits and G x E. For this reason, in this study we propose a multiple-trait and multiple-environment model for count data. The proposed model was developed under the Bayesian paradigm for which we developed a Markov Chain Monte Carlo (MCMC) with noninformative priors. This allows obtaining all required full conditional distributions of the parameters leading to an exact Gibbs sampler for the posterior distribution. Our model was tested with simulated data and a real data set. Results show that the proposed multi-trait, multi-environment model is an attractive alternative for modeling multiple count traits measured in multiple environments.

  • 出版日期2017-5