Application of a BOSS-Gaussian Interface for QM/MM Simulations of Henry and Methyl Transfer Reactions

作者：Vilseck Jonah Z^*; Kostal Jakub; Tirado Rives Julian; Jorgensen William L

来源：Journal of Computational Chemistry, 2015, 36(27): 2064-2074.

DOI：10.1002/jcc.24045

• quantum mechanics and molecular mechanics
• BOSS
• Gaussian 09
• charge model 5
• Henry reaction
• methyl transfer reaction
• reaction path

Hybrid quantum mechanics and molecular mechanics (QM/MM) computer simulations have become an indispensable tool for studying chemical and biological phenomena for systems too large to treat with QM alone. For several decades, semiempirical QM methods have been used in QM/MM simulations. However, with increased computational resources, the introduction of ab initio and density function methods into on-thefly QM/MM simulations is being increasingly preferred. This adaptation can be accomplished with a program interface that tethers independent QM and MM software packages. This report introduces such an interface for the BOSS and Gaussian programs, featuring modification of BOSS to request QM energies and partial atomic charges from Gaussian. A customizable C-shell linker script facilitates the interprogram communication. The BOSS-Gaussian interface also provides convenient access to Charge Model 5 (CM5) partial atomic charges for multiple purposes including QM/MM studies of reactions. In this report, the BOSS-Gaussian interface is applied to a nitroaldol (Henry) reaction and two methyl transfer reactions in aqueous solution. Improved agreement with experiment is found by determining free-energy surfaces with MP2/CM5 QM/MM simulations than previously reported investigations using semiempirical methods.

• 出版日期2015-10-15