Microbial Culturomics Application for Global Health: Noncontiguous Finished Genome Sequence and Description of Pseudomonas massiliensis Strain CB-1(T) sp nov in Brazil

作者：Bardet Lucie; Cimmino Teresa; Buffet Clemence; Michelle Caroline; Rathored Jaishriram; Tandina Fatalmoudou; Lagier Jean Christophe; Khelaifia Saber; Abrahao Jonatas; Raoult Didier; Rolain Jean Marc^*

来源：OMICS: A Journal of Integrative Biology , 2018, 22(2): 164-175.

DOI：10.1089/omi.2017.0027

• global health
• microbial culturomics
• Pseudomonas massiliensis
• system diagnostics
• taxono-genomics

Culturomics is a new postgenomics field that explores the microbial diversity of the human gut coupled with taxono-genomic strategy. Culturomics, and the microbiome science more generally, are anticipated to transform global health diagnostics and inform the ways in which gut microbial diversity contributes to human health and disease, and by extension, to personalized medicine. Using culturomics, we report in this study the description of strain CB1(T) (=CSUR P1334=DSM 29075), a new species isolated from a stool specimen from a 37-year-old Brazilian woman. This description includes phenotypic characteristics and complete genome sequence and annotation. Strain CB1(T) is a gram-negative aerobic and motile bacillus, exhibits neither catalase nor oxidase activities, and presents a 98.3% 16S rRNA sequence similarity with Pseudomonas putida. The 4,723,534bp long genome contains 4239 protein-coding genes and 74 RNA genes, including 15 rRNA genes (5 16S rRNA, 4 23S rRNA, and 6 5S rRNA) and 59 tRNA genes. Strain CB1(T) was named Pseudomonas massiliensis sp. nov. and classified into the family Pseudomonadaceae. This study demonstrates the usefulness of microbial culturomics in exploration of human microbiota in diverse geographies and offers new promise for incorporating new omics technologies for innovation in diagnostic medicine and global health.

• 出版日期2018-2