3D-Lab: a collaborative web-based platform for molecular modeling

作者：Grebner Christoph; Norrby Magnus; Enstrom Jonatan; Nilsson Ingemar; Hogner Anders; Henriksson Jonas; Westin Johan; Faramarzi Farzad; Werner Philip; Bostrom Jonas

来源：Future Medicinal Chemistry, 2016, 8(14): 1739-1752.

DOI：10.4155/fmc-2016-0081

<jats:p> Aim: The use of 3D information has shown impact in numerous applications in drug design. However, it is often under-utilized and traditionally limited to specialists. We want to change that, and present an approach making 3D information and molecular modeling accessible and easy-to-use ‘for the people’. Methodology/results: A user-friendly and collaborative web-based platform (3D-Lab) for 3D modeling, including a blazingly fast virtual screening capability, was developed. 3D-Lab provides an interface to automatic molecular modeling, like conformer generation, ligand alignments, molecular dockings and simple quantum chemistry protocols. 3D-Lab is designed to be modular, and to facilitate sharing of 3D-information to promote interactions between drug designers. Recent enhancements to our open-source virtual reality tool Molecular Rift are described. Conclusion: The integrated drug-design platform allows drug designers to instantaneously access 3D information and readily apply advanced and automated 3D molecular modeling tasks, with the aim to improve decision-making in drug design projects. </jats:p>

• 出版日期2016-9