Minimal model of transcriptional elongation processes with pauses

作者:Wang Jingkui; Pfeuty Benjamin; Thommen Quentin; Romano M Carmen; Lefranc Marc*
来源:Physical Review E, 2014, 90(5): 050701.
DOI:10.1103/PhysRevE.90.050701

摘要

Fundamental biological processes such as transcription and translation, where a genetic sequence is sequentially read by a macromolecule, have been well described by a classical model of nonequilibrium statistical physics, the totally asymmetric exclusion principle (TASEP). This model describes particles hopping between sites of a one-dimensional lattice, with the particle current determining the transcription or translation rate. An open problem is how to analyze a TASEP where particles can pause randomly, as has been observed during transcription. In this work, we report that surprisingly, a simple mean-field model predicts well the particle current for all values of the average pause duration, using a simple description of blocking behind paused particles.