A Genetic Algorithm- Back Propagation Artificial Neural Network Model to Quantify the Affinity of Flavonoids Toward P-Glycoprotein

作者：Shen Jibin; Cui Ying^*; Gu Jun; Li Yaxiao; Li Lingzhi

来源：Combinatorial Chemistry & High Throughput Screening, 2014, 17(2): 162-172.

DOI：10.2174/1386207311301010002

• Back-propagation artificial neural networks
• flavonoids
• genetic algorithm
• P-glycoprotein

Flavonoids, the most diverse class of plant secondary metabolites, exhibit high affinity toward the purified cytosolic NBD2(C-terminal nucleotide-binding domain) of P-glycoprotein (P-gp). To explore the affinity of flavonoids for P-gp, quantitative structure-activity relationships (QSARs) models were developed using back-propagation artificial neural networks (BPANN) and multiple linear regression (MLR). Molecular descriptors were calculated using PaDEL-Descriptor, and the number of descriptors was then reduced using a genetic algorithm (GA) and stepwise regression. The MLR (R-2=0.855, q(2)=0.8138, R-ext(2)=0.6916), 14-3-1 BPANN (R-2=0.8514, q(2)=0.7695, R-ext(2)=0.8142), 14-4-1 BPANN (R-2=0.9199, q(2)=0.7733, R-ext(2)=0.8731), and 14-5-1 BPANN (R-2=0.8660, q(2)=0.7432, R-ext(2)=0.8292) models all showed good robustness. While BPANN models exceeded significantly MLR in predictable performance for their flexible characters, could be used to predict the affinity of flavonoids for P-gp and applied in further drug screening.

• 出版日期2014-2
• 单位中国人民武装警察部队学院; 中国人民武装警察部队江西省总队医院