A cryptic Tudor domain links BRWD2/PHIP to COMPASS-mediated histone H3K4 methylation

作者:Morgan Marc A J; Rickels Ryan A; Collings Clayton K; He Xiaolin; Cao Kaixiang; Herz Hans Martin; Cozzolino Kira A; Abshiru Nebiyu A; Marshall Stacy A; Rendleman Emily J; Sze Christie C; Piunti Andrea; Kelleher Neil L; Savas Jeffrey N; Shilatifard Ali*
来源:Genes & Development, 2017, 31(19): 2003-2014.
DOI:10.1101/gad.305201.117

摘要

Histone H3 Lys4 (H3K4) methylation is a chromatin feature enriched at gene cis-regulatory sequences such as promoters and enhancers. Here we identify an evolutionarily conserved factor, BRWD2/PHIP, which colocalizes with histone H3K4 methylation genome-wide in human cells, mouse embryonic stem cells, and Drosophila. Biochemical analysis of BRWD2 demonstrated an association with the Cullin-4-RING ubiquitin E3 ligase-4 (CRL4) complex, nucleosomes, and chromatin remodelers. BRWD2/PHIP binds directly to H3K4 methylation through a previously unidentified chromatin-binding module related to Royal Family Tudor domains, which we named the Crypto Tudor domain. Using CRISPR-Cas9 genetic knockouts, we demonstrate that COMPASS H3K4 methyltransferase family members differentially regulate BRWD2/PHIP chromatin occupancy. Finally, we demonstrate that depletion of the single Drosophila homolog dBRWD3 results in altered gene expression and aberrant patterns of histone H3 Lys27 acetylation at enhancers and promoters, suggesting a cross-talk between these chromatin modifications and transcription through the BRWD protein family.