Amide I Vibrational Properties Affected by Hydrogen Bonding Out-of-Plane of the Peptide Group

作者：Torii Hajime^*

来源：Journal of Physical Chemistry Letters, 2015, 6(4): 727-733.

DOI：10.1021/acs.jpclett.5b00004

The amide I vibrational properties of a peptide water complex in various intermolecular configurations are analyzed theoretically to see whether a water molecule with a weak out hydrogen bond really induces a large low frequency shift It is shown that the frequency shift strongly depends on the C=O center dot center dot center dot H angle, with a larger low frequency shift as the C=O center dot center dot center dot H becomes more bent, suggesting that the so-called hydrated helix with a rather low amide I frequency has an additional water molecule located out of the peptide group as compared with a typical alpha-helix. The infrared intensity also depends on the angular position of water. A new model parameter set (that can be combined with molecular dynamics) is developed for a more correct representation of the hydration-induced frequency shift The question regarding the scalar and vectorial nature of the molecular properties related to the frequency shift is also discussed.

• 出版日期2015-2-19