Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breeding

作者：Joshi Trupti; Fitzpatrick Michael R; Chen Shiyuan; Liu Yang; Zhang Hongxin; Endacott Ryan Z; Gaudiello Eric C; Stacey Gary; Nguyen Henry T; Xu Dong^*

来源：Nucleic Acids Research, 2014, 42(D1): D1245-D1252.

DOI：10.1093/nar/gkt905

Soybean Knowledge Base (http://soykb.org) is a comprehensive web resource developed for bridging soybean translational genomics and molecular breeding research. It provides information for six entities including genes/proteins, microRNAs/sRNAs, metabolites, single nucleotide polymorphisms, plant introduction lines and traits. It also incorporates many multi-omics datasets including transcriptomics, proteomics, metabolomics and molecular breeding data, such as quantitative trait loci, traits and germplasm information. Soybean Knowledge Base has a new suite of tools such as In Silico Breeding Program for soybean breeding, which includes a graphical chromosome visualizer for ease of navigation. It integrates quantitative trait loci, traits and germplasm information along with genomic variation data, such as single nucleotide polymorphisms, insertions, deletions and genome-wide association studies data, from multiple soybean cultivars and Glycine soja.

• 出版日期2014-1