Extensive Natural Epigenetic Variation at a De Novo Originated Gene

作者:Silveira Amanda Bortolini*; Trontin Charlotte; Cortijo Sandra; Barau Joan; Vieira Del Bem Luiz Eduardo; Loudet Olivier; Colot Vincent; Vincentz Michel
来源:PLoS Genetics, 2013, 9(4): e1003437.
DOI:10.1371/journal.pgen.1003437

摘要

Epigenetic variation, such as heritable changes of DNA methylation, can affect gene expression and thus phenotypes, but examples of natural epimutations are few and little is known about their stability and frequency in nature. Here, we report that the gene Qua-Quine Starch (QQS) of Arabidopsis thaliana, which is involved in starch metabolism and that originated de novo recently, is subject to frequent epigenetic variation in nature. Specifically, we show that expression of this gene varies considerably among natural accessions as well as within populations directly sampled from the wild, and we demonstrate that this variation correlates negatively with the DNA methylation level of repeated sequences located within the 5'end of the gene. Furthermore, we provide extensive evidence that DNA methylation and expression variants can be inherited for several generations and are not linked to DNA sequence changes. Taken together, these observations provide a first indication that de novo originated genes might be particularly prone to epigenetic variation in their initial stages of formation.

  • 出版日期2013-4