ASAR: visual analysis of metagenomes in R

作者：Orakov, Askarbek N.^*; Sakenova, Nazgul K.; Sorokin, Anatoly; Goryanin, Igor I.^*

来源：Bioinformatics, 2018, 34(8): 1404-+.

DOI：10.1093/bioinformatics/btx775

• GENOMES

Motivation: Functional and taxonomic analyses are critical steps in understanding interspecific interactions within microbial communities. Currently, such analyses are run separately, which complicates interpretation of results. Here we present the ASAR interactive tool for simultaneous analysis of metagenomic data in three dimensions: taxonomy, function, metagenome.
Results: An interactive data analysis tool for selection, aggregation and visualization of metagenomic data is presented. Functional analysis with a SEED hierarchy and pathway diagram based on KEGG orthology based upon MG-RAST annotation results is available.

• 出版日期2018-4-15
• 单位中国科学院天津工业生物技术研究所