A plasma-membrane E-MAP reveals links of the eisosome with sphingolipid metabolism and endosomal trafficking

作者:Aguilar Pablo S; Froehlich Florian; Rehman Michael; Shales Mike; Ulitsky Igor; Olivera Couto Agustina; Braberg Hannes; Shamir Ron; Walter Peter; Mann Matthias; Ejsing Christer S; Krogan Nevan J*; Walther Tobias C
来源:Nature Structural & Molecular Biology, 2010, 17(7): 901-U175.
DOI:10.1038/nsmb.1829

摘要

The plasma membrane delimits the cell and controls material and information exchange between itself and the environment. How different plasma-membrane processes are coordinated and how the relative abundance of plasma-membrane lipids and proteins is homeostatically maintained are not yet understood. Here, we used a quantitative genetic interaction map, or E-MAP, to functionally interrogate a set of similar to 400 genes involved in various aspects of plasma-membrane biology, including endocytosis, signaling, lipid metabolism and eisosome function. From this E-MAP, we derived a set of 57,799 individual interactions between genes functioning in these various processes. Using triplet genetic motif analysis, we identified a new component of the eisosome, Eis1, and linked the poorly characterized gene EMP70 to endocytic and eisosome function. Finally, we implicated Rom2, a GDP/GTP exchange factor for Rho1 and Rho2, in the regulation of sphingolipid metabolism.

  • 出版日期2010-7