A Novel Targeted Learning Method for Quantitative Trait Loci Mapping

作者:Wang Hui*; Zhang Zhongyang; Rose Sherri; van der Laan Mark
来源:GENETICS, 2014, 198(4): 1368-+.
DOI:10.1534/genetics.114.168955

摘要

We present a novel semiparametric method for quantitative trait loci (QTL) mapping in experimental crosses. Conventional genetic mapping methods typically assume parametric models with Gaussian errors and obtain parameter estimates through maximum-likelihood estimation. In contrast with univariate regression and interval-mapping methods, our model requires fewer assumptions and also accommodates various machine-learning algorithms. Estimation is performed with targeted maximum-likelihood learning methods. We demonstrate our semiparametric targeted learning approach in a simulation study and a well-studied barley data set.

  • 出版日期2014-12