Fast folding dynamics of an alpha-helical peptide with bulky side chains

作者:Petty SA; Volk M*
来源:Physical Chemistry Chemical Physics, 2004, 6(5): 1022-1030.
DOI:10.1039/b312348k

摘要

The fast folding/unfolding dynamics of the alpha-helical polypeptide poly-N-5-(3-hydroxypropyl)-L-glutamine, PHPG, was observed in D2O after a nanosecond laser-induced temperature jump of 1degreesC. The sudden rise in temperature disturbs the helix-coil equilibrium of the peptide and the ensuing structural relaxation was monitored by time-resolved IR-spectroscopy of the amide I' band with a time resolution of 12 ns. After an initial relaxation on the time scale of a few nanoseconds, probably arising from a local rearrangement of random coil or side chain structures, the helix-coil relaxation proceeds on the time scale of a few hundred nanoseconds. The observed time constant of 227 ns is very similar to the helix-coil relaxation time constants observed for short alanine-based peptides, in spite of the greater length and more complex and bulky side chain of PHPG.

  • 出版日期2004