AthaMap, integrating transcriptional and post-transcriptional data

作者：Buelow Lorenz; Engelmann Stefan; Schindler Martin; Hehl Reinhard^*

来源：Nucleic Acids Research, 2009, 37(Database): D983-D986.

DOI：10.1093/nar/gkn709

The AthaMap database generates a map of predicted transcription factor binding sites (TFBS) for the whole Arabidopsis thaliana genome. AthaMap has now been extended to include data on post-transcriptional regulation. A total of 403 173 genomic positions of small RNAs have been mapped in the A. thaliana genome. These identify 5772 putative post-transcriptionally regulated target genes. AthaMap tools have been modified to improve the identification of common TFBS in co-regulated genes by subtracting post-transcriptionally regulated genes from such analyses. Furthermore, AthaMap was updated to the TAIR7 genome annotation, a graphic display of gene analysis results was implemented, and the TFBS data content was increased. AthaMap is freely available at http://www.athamap.de/.

• 出版日期2009-1