Aggregate Geometry in Amyloid Fibril Nucleation

作者：Irback Anders^*; Jonsson Sigurour A E; Linnemann Niels; Linse Bjorn; Wallin Stefan

来源：Physical Review Letters, 2013, 110(5): 058101.

DOI：10.1103/PhysRevLett.110.058101

We present and study a minimal structure-based model for the self-assembly of peptides into ordered beta-sheet-rich fibrils. The peptides are represented by unit-length sticks on a cubic lattice and interact by hydrogen bonding and hydrophobicity forces. Using Monte Carlo simulations with %26gt;10(5) peptides, we show that fibril formation occurs with sigmoidal kinetics in the model. To determine the mechanism of fibril nucleation, we compute the joint distribution in length and width of the aggregates at equilibrium, using an efficient cluster move and flat-histogram techniques. This analysis, based on simulations with 256 peptides in which aggregates form and dissolve reversibly, shows that the main free-energy barriers that a nascent fibril has to overcome are associated with changes in width. DOI: 10.1103/PhysRevLett.110.058101

• 出版日期2013-1-28