Novel method for analyzing proteome

作者:Liao, Bo*; Luo, Jiawei; Li, Renfa; Zhu, Wen
来源:International Journal of Quantum Chemistry, 2007, 107(6): 1295-1300.
DOI:10.1002/qua.21287

摘要

We propose a 6D representation of protein sequences consisting of 20 amino acids. Based on this 6D representation, we propose a proteome distance measure for constructing phylogenic tree. And we make use of the corresponding similarity matrix to construct phylogenic tree. The examination of phylogenic tree belong to 30 mitochondrial sequence illustrates the utility of our approach.