DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

作者：Wang, Likun; Feng, Zhixing; Wang, Xi; Wang, Xiaowo; Zhang, Xuegong

来源：Bioinformatics, 2010, 26(1): 136-138.

DOI：10.1093/bioinformatics/btp612

• MICROARRAYS
• SINGLE

High-throughput RNA sequencing (RNA-seq) is rapidly emerging as a major quantitative transcriptome profiling platform. Here, we present DEGseq, an R package to identify differentially expressed genes or isoforms for RNA-seq data from different samples. In this package, we integrated three existing methods, and introduced two novel methods based on MA-plot to detect and visualize gene expression difference.

• 出版日期2010-1-1
• 单位吉林大学; 清华大学