A Method for Detecting Long Non-Coding RNAs with Tiled RNA Expression Microarrays

作者:Lund Sigrun Helga*; Gudbjartsson Daniel Fannar; Rafnar Thorunn; Sigurdsson Asgeir; Gudjonsson Sigurjon Axel; Gudmundsson Julius; Stefansson Kari; Stefansson Gunnar
来源:PLos One, 2014, 9(6): e99899.
DOI:10.1371/journal.pone.0099899

摘要

Long non-coding ribonucleic acids (lncRNAs) have been proposed as biomarkers in prostate cancer. This paper proposes a selection method which uses data from tiled microarrays to identify relatively long regions of moderate expression independent of the microarray platform and probe design. The method is used to search for candidate long non-coding ribonucleic acids (lncRNAs) at locus 8q24 and is run on three independent experiments which all use samples from prostate cancer patients. The robustness of the method is tested by utilizing repeated copies of tiled probes. The method shows high consistency between experiments that used the same samples, but different probe layout. There also is statistically significant consistency when comparing experiments with different samples. The method selected the long non-coding ribonucleic acid PCNCR1 in all three experiments.

  • 出版日期2014-6-17