ArrayExpress update-from an archive of functional genomics experiments to the atlas of gene expression

作者：Parkinson Helen; Kapushesky Misha; Kolesnikov Nikolay; Rustici Gabriella; Shojatalab Mohammad; Abeygunawardena Niran; Berube Hugo; Dylag Miroslaw; Emam Ibrahim; Farne Anna; Holloway Ele; Lukk Margus; Malone James; Mani Roby; Pilicheva Ekaterina; Rayner Tim F; Rezwan Faisal; Sharma Anjan; Williams Eleanor; Bradley Xiangqun Zheng; Adamusiak Tomasz; Brandizi Marco; Burdett Tony; Coulson Richard; Krestyaninova Maria; Kurnosov Pavel; Maguire Eamonn; Neogi Sudeshna Guha

来源：Nucleic Acids Research, 2009, 37(Database): D868-D872.

DOI：10.1093/nar/gkn889

ArrayExpress http://www.ebi.ac.uk/arrayexpress consists of three components: the ArrayExpress Repository-a public archive of functional genomics experiments and supporting data, the ArrayExpress Warehouse-a database of gene expression profiles and other bio-measurements and the ArrayExpress Atlas-a new summary database and meta-analytical tool of ranked gene expression across multiple experiments and different biological conditions. The Repository contains data from over 6000 experiments comprising approximately 200 000 assays, and the database doubles in size every 15 months. The majority of the data are array based, but other data types are included, most recently ultra high-throughput sequencing transcriptomics and epigenetic data. The Warehouse and Atlas allow users to query for differentially expressed genes by gene names and properties, experimental conditions and sample properties, or a combination of both. In this update, we describe the ArrayExpress developments over the last two years.

• 出版日期2009-1
• 单位河北医科大学