A MULTIPLE TIME-SCALE COMPUTATIONAL MODEL OF A TUMOR AND ITS MICRO ENVIRONMENT

作者:DuBois Christopher*; Farnham Jesse; Aaron Eric; Radunskaya Ami
来源:Mathematical Biosciences and Engineering, 2013, 10(1): 121-150.
DOI:10.3934/mbe.2013.10.121

摘要

Experimental evidence suggests that a tumor%26apos;s environment may be critical to designing successful therapeutic protocols: Modeling interactions between a tumor and its environment could improve our understanding of tumor growth and inform approaches to treatment. This paper describes an effcient, flexible, hybrid cellular automaton-based implementation of numerical solutions to multiple time-scale reaction-diffusion equations, applied to a model of tumor proliferation. The growth and maintenance of cells in our simulation depend on the rate of cellular energy (ATP) metabolized from nearby nutrients such as glucose and oxygen. Nutrient consumption rates are functions of local pH as well as local concentrations of oxygen and other fuels. The diffusion of these nutrients is modeled using a novel variation of random-walk techniques. Furthermore, we detail the effects of three boundary update rules on simulations, describing their effects on computational effciency and biological realism. Qualitative and quantitative results from simulations provide insight on how tumor growth is affected by various environmental changes such as micro-vessel density or lower pH, both of high interest in current cancer research.

  • 出版日期2013-2