AluY-mediated germline deletion, duplication and somatic stem cell reversion in UBE2T defines a new subtype of Fanconi anemia

作者:Virts Elizabeth L; Jankowska Anna; Mackay Craig; Glaas Marcel F; Wiek Constanze; Kelich Stephanie L; Lottmann Nadine; Kennedy Felicia M; Marchal Christophe; Lehnert Erik; Scharf Ruediger E; Dufour Carlo; Lanciotti Marina; Farruggia Piero; Santoro Alessandra; Savasan Suereyya; Scheckenbach Kathrin; Schipper Joerg; Wagenmann Martin; Lewisl Todd; Leffale Michael; Farlow Janice L; Foroud Tatiana M; Honischl Ellen; Niederacherl Dieter; Chakraborty Sujata C
来源:Human Molecular Genetics, 2015, 24(18): 5093-5108.
DOI:10.1093/hmg/ddv227

摘要

Fanconi anemia (FA) is a rare inherited disorder clinically characterized by congenital malformations, progressive bone marrow failure and cancer susceptibility. At the cellular level, FA is associated with hypersensitivity to DNA-crosslinking genotoxins. Eight of 17 known FA genes assemble the FA E3 ligase complex, which catalyzes monoubiquitination of FANCD2 and is essential for replicative DNA crosslink repair. Here, we identify the first FA patient with biallelic germline mutations in the ubiquitin E2 conjugase UBE2T. Both mutations were aluY-mediated: a paternal deletion and maternal duplication of exons 2-6. These loss-of-function mutations in UBE2T induced a cellular phenotype similar to biallelic defects in early FA genes with the absence of FANCD2 monoubiquitination. Thematernal duplication produced a mutant mRNA that could encode a functional protein but was degraded by nonsense-mediated mRNA decay. In the patient's hematopoietic stem cells, the maternal allele with the duplication of exons 2-6 spontaneously reverted to a wild-type allele by monoallelic recombination at the duplicated aluY repeat, thereby preventing bone marrow failure. Analysis of germline DNA of 814 normal individuals and 850 breast cancer patients for deletion or duplication of UBE2T exons 2-6 identified the deletion in only two controls, suggesting aluY-mediated recombinations within the UBE2T locus are rare and not associated with an increased breast cancer risk. Finally, a loss-of-function germline mutation in UBE2T was detected in a high-risk breast cancer patient with wild-type BRCA1/2. Cumulatively, we identified UBE2T as a bona fide FA gene (FANCT) that also may be a rare cancer susceptibility gene.

  • 出版日期2015-9-15

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