An easy and efficient approach for testing identifiability

作者：Kreutz Clemens^*

来源：Bioinformatics, 2018, 34(11): 1913-1921.

DOI：10.1093/bioinformatics/bty035

Motivation: The feasibility of uniquely estimating parameters of dynamical systems from observations is a widely discussed aspect of mathematical modelling. Several approaches have been published for analyzing this so-called identifiability of model parameters. However, they are typically computationally demanding, difficult to perform and/or not applicable in many application settings.
Results: Here, an approach is presented which enables quickly testing of parameter identifiability. Numerical optimization with a penalty in radial direction enforcing displacement of the parameters is used to check whether estimated parameters are unique, or whether the parameters can be altered without loss of agreement with the data indicating non-identifiability. This Identifiability-Test by Radial Penalization (ITRP) can be employed for every model where optimization-based parameter estimation like least-squares or maximum likelihood is feasible and is therefore applicable for all typical systems biology models. The approach is illustrated and tested using 11 ordinary differential equation (ODE) models.

• 出版日期2018-6-1