NetComm: a network analysis tool based on communicability

作者：Campbell Ian M; James Regis A; Chen Edward S; Shaw Chad A^*

来源：Bioinformatics, 2014, 30(23): 3387-3389.

DOI：10.1093/bioinformatics/btu536

Motivation: Set-based network similarity metrics are increasingly used to productively analyze genome-wide data. Conventional approaches, such as mean shortest path and clique-based metrics, have been useful but are not well suited to all applications. Computational scientists in other disciplines have developed communicability as a complementary metric. Network communicability considers all paths of all lengths between two network members. Given the success of previous network analyses of protein-protein interactions, we applied the concepts of network communicability to this problem. Here we show that our communicability implementation has advantages over traditional approaches. Overall, analyses suggest network communicability has considerable utility in analysis of large-scale biological networks.

• 出版日期2014-12-1