A Measure of Protein Sequence Characteristics Based on the Frequency and the Position Entropy of Existing K-words

作者：Qi, Zhao-Hui^*; Jin, Meng-Zhe; Yang, Hong

来源：MATCH-Communications in Mathematical and in Computer Chemistry, 2015, 73(3): 731-748.

• 2-D GRAPHICAL REPRESENTATION
• PHYSICOCHEMICAL PROPERTIES
• DNA-SEQUENCES
• ALIGNMENT
• CURVE
• SIMILARITY
• PHYLOGENY
• GENE

Based on the frequency and the position distribution entropy of the existing k-words, we construct a modified statistical method for k-words. We call this method as an Existing-k-word method. The method consists of two parts. The first is to extract the existing k-words in proteins but not the all possible 20(k) k-words. The other is to design a feature vector consisting of the frequencies and the position distribution entropies of the existing k-words. Then, this proposed method is applied to two datasets, nine ND5 proteins (NADH dehydrogenase subunit 5), and twenty-four transferrin protein sequences. The results illustrate the utility of the proposed method.

• 出版日期2015