科研之友
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摘要
According to the characters of RNA secondary structure, we introduce a method for RNA secondary structure alignment by changing the structure alignment to sequence alignment based on a binary coding method. Associating with the proposed coding rules and exclusive-OR operation, we can solve the following problems easily: (i) distinguishing the difference between two sequences; (ii) judging the prefix of a sequence matches the suffix of the other sequence; (iii) judging two sequences have common subsequences; (iv) judging a sequence is the subsequence of another sequence.
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